Easy Model

EasyModel is a web tool that makes predicting the 3D structure of proteins simple. It uses Modeller, a popular tool for comparing and modeling protein structures. Normally, using Modeller requires some Python scripting, which can be tough for many users. EasyModel fixes this by offering a friendly graphical interface that automates the process.

Key Features

EasyModel has a user friendly graphical interface. No need for command line interactions or Python scripting. It performs comparative modeling automatically, so users do not need programming knowledge. EasyModel offers three different sections for predicting protein structures. These are basic modeling, advanced modeling with loop refining, and advanced modeling with multiple templates.

Benefits

EasyModel makes protein structure prediction easy with its user friendly interface. It automates comparative modeling and users do not need programming knowledge.

Use Cases

Basic Modeling

Basic modeling is great for simple cases. Users can import their protein PDB file and generate a log file and DOPE score diagram.

Advanced Modeling Loop Refining

Loop refining makes the protein structure model more accurate by improving poorly modeled loops. This method uses special scoring functions and optimization protocols.

Advanced Modeling Multiple Templates

Multiple templates are used when a single template does not closely match the target protein sequence. This approach makes the model more accurate by combining different segments from various templates.

Cost Price

The cost price of the product is not mentioned.

Funding

The funding details of the product is not mentioned.

Reviews Testimonials

EasyModel was tested using the lactate dehydrogenase enzyme sequence. The modeling process created a DOPE score diagram, which shows the quality of the constructed model per residue. The NGL viewer shows the best model, and users can download alignment files and log files. The tool is available at EasyModel.